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a city of thousands with no mayor, running flawlessly on dance and pheromones

means A structure or colony where bees live and work together, or by extension any place buzzing with crowded, busy activity.

from From Old English 'hyf,' the name for a bee's dwelling, with relatives across the Germanic languages and possibly a deeper cousin in words meaning 'to cover' or 'arch over' — fitting, since the oldest hives were dome-shaped baskets. The sense of a frantically busy place ('a hive of activity') is a later figurative leap, borrowing the bees' famous industry as a metaphor for human bustle.

thermostatBees fan and shiver to hold 95°F year-round
voting systemSwarms pick new homes by competitive dancing
architectureHexagons use the least wax for most storage
food mathOne hive's honey takes flights circling Earth twice
the matriarchA queen lays 2,000 eggs per day
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